makedb - Error writing file tmpdir/diamond-tmp-xz4Aj1

phrh

New member
Hello,
I am running the following command

diamond makedb -p 16 --in reference_proteomes.fasta.gz --taxonmap reference_proteomes.taxid_map --taxonnodes /home/paula/Desktop/Datos/taxdump/nodes.dmp -d reference_proteomes.dmn --tmpdir tmpdir --parallel-tmpdir tmpdir

I get the following output and error

Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Database input file: reference_proteomes.fasta.gz
Opening the database file... [0s]
Loading sequences... [9.051s]
Masking sequences... [4.751s]
Writing sequences... [0.979s]
Writing accessions... [2.287s]
Hashing sequences... [0.297s]
Loading sequences... [9.069s]
Masking sequences... [5.044s]
Writing sequences... [1.005s]
Writing accessions... Input/output error
[2.662s]
Error: Error writing file tmpdir/diamond-tmp-xz4Aj1

I added the --tmpdir tmpdir --parallel-tmpdir tmpdir trying to solve this issue but it didn't. Do you have any ideas what can it be?
I am using diamond v0.9.30.131


Thank you
 
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